STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHN03856.1Malate/lactate/ureidoglycolate dehydrogenase, LDH2 family; Belongs to the LDH2/MDH2 oxidoreductase family. (359 aa)    
Predicted Functional Partners:
SHN03870.1
Mn2+ and Fe2+ transporters of the NRAMP family.
       0.773
SHN22020.1
Malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+).
    
 0.736
SHN14887.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
     
 0.667
SHN27396.1
2-phosphosulfolactate phosphatase; Belongs to the ComB family.
     
 0.634
mdh
Malate dehydrogenase (NAD); Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family.
     
 0.633
SHN03842.1
Exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase.
       0.598
SHN03807.1
Lactate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
 
  
 0.539
SHM33198.1
Phosphosulfolactate synthase.
  
   
 0.537
SHN12776.1
3-dehydro-L-gulonate 2-dehydrogenase; Belongs to the LDH2/MDH2 oxidoreductase family.
  
  
 
0.528
SHN03818.1
Putative aminopeptidase FrvX.
       0.419
Your Current Organism:
Cyclobacterium lianum
NCBI taxonomy Id: 388280
Other names: C. lianum, CGMCC 1.6102, Cyclobacterium lianum Ying et al. 2006, JCM 14011, strain HY9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.