STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHN07644.1Hypothetical protein. (374 aa)    
Predicted Functional Partners:
SHN10202.1
3',5'-cyclic AMP phosphodiesterase CpdA.
  
     0.714
SHN02543.1
Heparinase II/III-like protein.
  
     0.657
SHM58300.1
SusD family protein.
  
     0.617
SHN13630.1
Hypothetical protein.
  
     0.601
SHN28325.1
Hypothetical protein.
  
    0.588
SHM77886.1
Parallel beta-helix repeat (two copies).
  
     0.584
SHM88993.1
Hypothetical protein.
  
     0.537
SHN15026.1
Protein of unknown function.
  
 
  0.515
SHM44257.1
Uncharacterized conserved protein YbaP, TraB family.
  
     0.472
SHN20189.1
Tat (twin-arginine translocation) pathway signal sequence.
  
     0.461
Your Current Organism:
Cyclobacterium lianum
NCBI taxonomy Id: 388280
Other names: C. lianum, CGMCC 1.6102, Cyclobacterium lianum Ying et al. 2006, JCM 14011, strain HY9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.