STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHN11809.1RteC protein. (265 aa)    
Predicted Functional Partners:
SHN11801.1
Helix-turn-helix domain-containing protein.
 
     0.891
SHN11788.1
Hypothetical protein.
 
     0.880
SHN11777.1
ATPase family associated with various cellular activities (AAA).
 
     0.873
SHN12135.1
Site-specific recombinase XerD; Belongs to the 'phage' integrase family.
 
     0.755
SHN11641.1
Hypothetical protein.
  
     0.729
SHN11652.1
Hypothetical protein.
  
     0.726
SHM86519.1
Helix-turn-helix domain-containing protein.
 
     0.635
SHN11871.1
Hypothetical protein.
 
     0.622
SHN11631.1
Hypothetical protein.
  
     0.616
SHN11893.1
Hypothetical protein.
 
     0.592
Your Current Organism:
Cyclobacterium lianum
NCBI taxonomy Id: 388280
Other names: C. lianum, CGMCC 1.6102, Cyclobacterium lianum Ying et al. 2006, JCM 14011, strain HY9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.