STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHN15808.1FecR family protein. (325 aa)    
Predicted Functional Partners:
SHM56140.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   0.711
SHN31709.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   0.690
SHM76827.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   0.677
SHN15796.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
   0.652
SHN15820.1
TonB-linked outer membrane protein, SusC/RagA family.
 
     0.617
SHN15826.1
Starch-binding associating with outer membrane.
 
     0.581
SHN10398.1
Iron complex outermembrane recepter protein.
  
   0.504
SHN15837.1
FAD dependent oxidoreductase.
       0.503
SHN22802.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   0.491
SHN15387.1
Sigma-70 region 2; Belongs to the sigma-70 factor family. ECF subfamily.
  
   0.480
Your Current Organism:
Cyclobacterium lianum
NCBI taxonomy Id: 388280
Other names: C. lianum, CGMCC 1.6102, Cyclobacterium lianum Ying et al. 2006, JCM 14011, strain HY9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.