Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHN21474.1 | SHN21482.1 | SAMN04488057_1116 | SAMN04488057_1117 | DNA processing protein. | Hypothetical protein. | 0.759 |
SHN21474.1 | SHN21489.1 | SAMN04488057_1116 | SAMN04488057_1118 | DNA processing protein. | Beta-phosphoglucomutase, HAD superfamily. | 0.931 |
SHN21474.1 | SHN21497.1 | SAMN04488057_1116 | SAMN04488057_1119 | DNA processing protein. | Site-specific recombinase XerD; Belongs to the 'phage' integrase family. | 0.464 |
SHN21482.1 | SHN21474.1 | SAMN04488057_1117 | SAMN04488057_1116 | Hypothetical protein. | DNA processing protein. | 0.759 |
SHN21482.1 | SHN21489.1 | SAMN04488057_1117 | SAMN04488057_1118 | Hypothetical protein. | Beta-phosphoglucomutase, HAD superfamily. | 0.789 |
SHN21482.1 | SHN21497.1 | SAMN04488057_1117 | SAMN04488057_1119 | Hypothetical protein. | Site-specific recombinase XerD; Belongs to the 'phage' integrase family. | 0.479 |
SHN21489.1 | SHN21474.1 | SAMN04488057_1118 | SAMN04488057_1116 | Beta-phosphoglucomutase, HAD superfamily. | DNA processing protein. | 0.931 |
SHN21489.1 | SHN21482.1 | SAMN04488057_1118 | SAMN04488057_1117 | Beta-phosphoglucomutase, HAD superfamily. | Hypothetical protein. | 0.789 |
SHN21489.1 | SHN21497.1 | SAMN04488057_1118 | SAMN04488057_1119 | Beta-phosphoglucomutase, HAD superfamily. | Site-specific recombinase XerD; Belongs to the 'phage' integrase family. | 0.479 |
SHN21497.1 | SHN21474.1 | SAMN04488057_1119 | SAMN04488057_1116 | Site-specific recombinase XerD; Belongs to the 'phage' integrase family. | DNA processing protein. | 0.464 |
SHN21497.1 | SHN21482.1 | SAMN04488057_1119 | SAMN04488057_1117 | Site-specific recombinase XerD; Belongs to the 'phage' integrase family. | Hypothetical protein. | 0.479 |
SHN21497.1 | SHN21489.1 | SAMN04488057_1119 | SAMN04488057_1118 | Site-specific recombinase XerD; Belongs to the 'phage' integrase family. | Beta-phosphoglucomutase, HAD superfamily. | 0.479 |