hrdB protein (Kocuria turfanensis) - STRING interaction network

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Score

hrdB

Unannotated protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. (498 aa)

Predicted Functional Partners:

rbpA

0.999

rpoZ

0.999

rpoA

0.999

rpoC

0.999

rpoB

0.999

KTU01_13590

0.990

KTU01_31430

0.985

whiB

0.949

dnaG

0.880

KTU01_32580

0.846

Your Current Organism:

Kocuria turfanensis

NCBI taxonomy Id: 388357
Other names: CCTCC AB 206107, JCM 15622, K. turfanensis, KCTC 19307, Kocuria sp. HO-9042, Kocuria turfanensis Zhou et al. 2008 emend. Camacho et al. 2017, strain HO-9042

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KTU01_13590	hrdB	GCA_001580365_02968	GCA_001580365_00103	Unannotated protein.	Unannotated protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.	0.990
KTU01_13590	rbpA	GCA_001580365_02968	GCA_001580365_00486	Unannotated protein.	Unannotated protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. Belongs to the RNA polymerase-binding protein RbpA family.	0.995
KTU01_13590	rpoA	GCA_001580365_02968	GCA_001580365_01128	Unannotated protein.	Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.994
KTU01_13590	rpoB	GCA_001580365_02968	GCA_001580365_01175	Unannotated protein.	Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
KTU01_13590	rpoC	GCA_001580365_02968	GCA_001580365_01174	Unannotated protein.	Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.996
KTU01_13590	rpoZ	GCA_001580365_02968	GCA_001580365_00549	Unannotated protein.	Unannotated protein; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.991
KTU01_31430	hrdB	GCA_001580365_00351	GCA_001580365_00103	Unannotated protein.	Unannotated protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.	0.985
KTU01_31430	rpoA	GCA_001580365_00351	GCA_001580365_01128	Unannotated protein.	Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.985
KTU01_31430	rpoB	GCA_001580365_00351	GCA_001580365_01175	Unannotated protein.	Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.992
KTU01_31430	rpoC	GCA_001580365_00351	GCA_001580365_01174	Unannotated protein.	Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.985
KTU01_31430	rpoZ	GCA_001580365_00351	GCA_001580365_00549	Unannotated protein.	Unannotated protein; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.985
KTU01_32580	hrdB	GCA_001580365_00479	GCA_001580365_00103	Unannotated protein.	Unannotated protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.	0.846
KTU01_32580	rbpA	GCA_001580365_00479	GCA_001580365_00486	Unannotated protein.	Unannotated protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. Belongs to the RNA polymerase-binding protein RbpA family.	0.852
KTU01_32580	rpoA	GCA_001580365_00479	GCA_001580365_01128	Unannotated protein.	Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.846
KTU01_32580	rpoB	GCA_001580365_00479	GCA_001580365_01175	Unannotated protein.	Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.851
KTU01_32580	rpoC	GCA_001580365_00479	GCA_001580365_01174	Unannotated protein.	Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.846
KTU01_32580	rpoZ	GCA_001580365_00479	GCA_001580365_00549	Unannotated protein.	Unannotated protein; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.846
dnaG	hrdB	GCA_001580365_03349	GCA_001580365_00103	Unannotated protein; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.	Unannotated protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.	0.880
dnaG	rpoA	GCA_001580365_03349	GCA_001580365_01128	Unannotated protein; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.	Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.602
dnaG	rpoB	GCA_001580365_03349	GCA_001580365_01175	Unannotated protein; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.	Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.757

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