STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CTQ63977.1Hypothetical protein. (203 aa)    
Predicted Functional Partners:
cobD-2
Cobalamin biosynthesis protein; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group.
       0.780
cobD
Threonine-phosphate decarboxylase.
       0.780
ppsE
Beta-ketoacyl-acyl-carrier-protein synthase I.
     
 0.511
epsJ
Putative glycosyltransferase EpsJ.
  
 
 0.459
gcvT_2
Aminomethyltransferase; Belongs to the GcvT family.
    
  0.456
gcvT_7
Aminomethyltransferase; Belongs to the GcvT family.
    
  0.456
CTQ63986.1
Hypothetical protein.
       0.449
gcvT_1
Aminomethyltransferase; Belongs to the GcvT family.
    
  0.437
gcvT_3
Aminomethyltransferase; Belongs to the GcvT family.
    
  0.437
gcvT_4
Aminomethyltransferase; Belongs to the GcvT family.
    
  0.437
Your Current Organism:
Labrenzia alexandrii
NCBI taxonomy Id: 388408
Other names: DSM 17067, L. alexandrii, Labrenzia alexandrii Biebl et al. 2007, NCIMB 14079, strain DFL-11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.