STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gsiB_1Glutathione-binding protein GsiB precursor. (527 aa)    
Predicted Functional Partners:
gsiC_1
Glutathione transport system permease protein GsiC.
 
 0.951
ddpC_1
Putative D,D-dipeptide transport system permease protein DdpC.
 
 0.943
oppD_1
Stage 0 sporulation protein KD; Belongs to the ABC transporter superfamily.
 
 
 0.909
gsiC_4
Glutathione transport system permease protein GsiC.
 0.884
dppB
Dipeptide transport system permease protein DppB.
 0.882
dppC_3
Dipeptide transport system permease protein DppC.
 0.861
ddpC_2
Putative D,D-dipeptide transport system permease protein DdpC.
 
 0.853
oppF_1
Stage 0 sporulation protein KE; Belongs to the ABC transporter superfamily.
 
 
 0.852
oppD_2
Stage 0 sporulation protein KD; Belongs to the ABC transporter superfamily.
 
 
 0.730
gsiC_3
Glutathione transport system permease protein GsiC.
 0.697
Your Current Organism:
Labrenzia alexandrii
NCBI taxonomy Id: 388408
Other names: DSM 17067, L. alexandrii, Labrenzia alexandrii Biebl et al. 2007, NCIMB 14079, strain DFL-11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.