STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dadA_1D-amino acid dehydrogenase small subunit. (411 aa)    
Predicted Functional Partners:
gcvT_2
Aminomethyltransferase; Belongs to the GcvT family.
  
 0.970
gcvT_7
Aminomethyltransferase; Belongs to the GcvT family.
  
 0.970
CTQ65790.1
Proline racemase; Belongs to the proline racemase family.
 
  
 0.923
CTQ65779.1
4-hydroxyproline epimerase; Belongs to the proline racemase family.
 
  
 0.901
dapA_2
4-hydroxy-tetrahydrodipicolinate synthase; Belongs to the DapA family.
 
  
  0.899
gltB_2
Ferredoxin-dependent glutamate synthase 1.
    
 0.810
dadA_3
D-amino acid dehydrogenase small subunit.
  
  
 
0.795
CTQ63766.1
Sarcosine oxidase, delta subunit family.
  
 0.784
CTQ68328.1
Sarcosine oxidase, delta subunit family.
  
 0.765
CTQ65787.1
L-Ala-D/L-Glu epimerase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
     0.748
Your Current Organism:
Labrenzia alexandrii
NCBI taxonomy Id: 388408
Other names: DSM 17067, L. alexandrii, Labrenzia alexandrii Biebl et al. 2007, NCIMB 14079, strain DFL-11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.