STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ycdF_1Glucose 1-dehydrogenase 2. (244 aa)    
Predicted Functional Partners:
ppsE
Beta-ketoacyl-acyl-carrier-protein synthase I.
  
 0.834
tsaC1_1
4-formylbenzenesulfonate dehydrogenase TsaC1/TsaC2.
 
    
0.827
gltB_2
Ferredoxin-dependent glutamate synthase 1.
     
 0.761
CTQ76059.1
(3R)-hydroxyacyl-ACP dehydratase subunit HadB.
 
 
  0.757
tcbD
Chloromuconate cycloisomerase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
    
  0.723
CTQ66885.1
Tetratricopeptide repeat protein.
   
 
 0.696
pfkB
6-phosphofructokinase isozyme 2; Belongs to the carbohydrate kinase PfkB family.
   
 
  0.672
lgrB
Linear gramicidin synthase subunit B.
 
 0.656
fabD
Malonyl CoA-acyl carrier protein transacylase.
 
 0.643
fabB
3-oxoacyl-[acyl-carrier-protein] synthase 1; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
  
 0.611
Your Current Organism:
Labrenzia alexandrii
NCBI taxonomy Id: 388408
Other names: DSM 17067, L. alexandrii, Labrenzia alexandrii Biebl et al. 2007, NCIMB 14079, strain DFL-11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.