STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ycdT_2Putative diguanylate cyclase YcdT. (408 aa)    
Predicted Functional Partners:
CTQ66644.1
Hypothetical protein.
  
   0.952
cph2_2
Bacteriophytochrome cph2.
 
 0.904
gmr_6
Cyclic di-GMP phosphodiesterase Gmr.
 
 
 0.894
dosP_2
Oxygen sensor protein DosP.
 
 0.879
cya_1
Adenylate cyclase; Belongs to the adenylyl cyclase class-4/guanylyl cyclase family.
  
 0.843
dosP_1
Oxygen sensor protein DosP.
 
 
  0.830
gmr_2
Cyclic di-GMP phosphodiesterase Gmr.
  
 
  0.828
cph2_1
Bacteriophytochrome cph2.
  
 
  0.828
yahA
Cyclic di-GMP phosphodiesterase YahA.
 
 
 0.822
barA_1
Signal transduction histidine-protein kinase BarA.
 
 0.820
Your Current Organism:
Labrenzia alexandrii
NCBI taxonomy Id: 388408
Other names: DSM 17067, L. alexandrii, Labrenzia alexandrii Biebl et al. 2007, NCIMB 14079, strain DFL-11
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