STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CTQ68514.1Hypothetical protein. (316 aa)    
Predicted Functional Partners:
CTQ68515.1
Hypothetical protein.
  
 0.993
CTQ68511.1
Transglutaminase-like superfamily protein.
  
 0.971
CTQ68508.1
Proteasome endopeptidase complex, archaeal, beta subunit.
 
    0.936
CTQ75719.1
Hypothetical protein.
 
  
0.859
CTQ67462.1
Transglutaminase-like superfamily protein.
 
  
 0.831
CTQ75716.1
Hypothetical protein; Bacterial transglutaminase-like N-terminal region.
 
  
 0.758
accD5
Putative propionyl-CoA carboxylase beta chain 5.
       0.446
Your Current Organism:
Labrenzia alexandrii
NCBI taxonomy Id: 388408
Other names: DSM 17067, L. alexandrii, Labrenzia alexandrii Biebl et al. 2007, NCIMB 14079, strain DFL-11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.