STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
apc3_1Acetophenone carboxylase gamma subunit. (668 aa)    
Predicted Functional Partners:
apc4
Acetophenone carboxylase delta subunit.
 0.996
apc3_2
Acetophenone carboxylase gamma subunit.
 
0.982
gltB_2
Ferredoxin-dependent glutamate synthase 1.
    
 0.882
putA
Bifunctional protein PutA; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
    
  0.758
rutB
Peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB.
 
  
  0.592
CTQ65722.1
DNA-binding transcriptional repressor PuuR.
 
    0.590
CTQ75665.1
succinyl-CoA synthetase subunit beta.
  
     0.506
CTQ72615.1
Fatty acid desaturase.
  
     0.468
ldh
Leucine dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
    
 0.448
CTQ73878.1
Tetratricopeptide repeat.
  
     0.441
Your Current Organism:
Labrenzia alexandrii
NCBI taxonomy Id: 388408
Other names: DSM 17067, L. alexandrii, Labrenzia alexandrii Biebl et al. 2007, NCIMB 14079, strain DFL-11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.