STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
degU_1Protease production enhancer protein. (226 aa)    
Predicted Functional Partners:
barA_1
Signal transduction histidine-protein kinase BarA.
   
 0.986
barA_2
Signal transduction histidine-protein kinase BarA.
   
 0.986
luxQ_2
Autoinducer 2 sensor kinase/phosphatase LuxQ.
 
 
 0.984
luxQ_3
Autoinducer 2 sensor kinase/phosphatase LuxQ.
  
 0.976
CTQ72214.1
Blue-light-activated protein.
   
 0.909
barA_4
Signal transduction histidine-protein kinase BarA.
   
 0.909
barA_3
Signal transduction histidine-protein kinase BarA.
 
 
 0.897
CTQ68172.1
Blue-light-activated protein.
 
 
 0.867
rpfC
Sensory/regulatory protein RpfC.
   
 0.867
cya_1
Adenylate cyclase; Belongs to the adenylyl cyclase class-4/guanylyl cyclase family.
  
 0.858
Your Current Organism:
Labrenzia alexandrii
NCBI taxonomy Id: 388408
Other names: DSM 17067, L. alexandrii, Labrenzia alexandrii Biebl et al. 2007, NCIMB 14079, strain DFL-11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.