Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
aroA | pheA | LAX5112_03569 | LAX5112_02813 | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | P-protein. | 0.721 |
aroA | serC | LAX5112_03569 | LAX5112_03203 | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | Phosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine. | 0.881 |
ghrA | hprA | LAX5112_03265 | LAX5112_04584 | Glyoxylate/hydroxypyruvate reductase A. | Glycerate dehydrogenase. | 0.437 |
ghrA | serA_1 | LAX5112_03265 | LAX5112_02657 | Glyoxylate/hydroxypyruvate reductase A. | D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | 0.450 |
ghrA | serC | LAX5112_03265 | LAX5112_03203 | Glyoxylate/hydroxypyruvate reductase A. | Phosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine. | 0.895 |
ghrA | slcC | LAX5112_03265 | LAX5112_04645 | Glyoxylate/hydroxypyruvate reductase A. | (S)-sulfolactate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | 0.494 |
ghrA | thrC | LAX5112_03265 | LAX5112_02368 | Glyoxylate/hydroxypyruvate reductase A. | Threonine synthase. | 0.631 |
hprA | ghrA | LAX5112_04584 | LAX5112_03265 | Glycerate dehydrogenase. | Glyoxylate/hydroxypyruvate reductase A. | 0.437 |
hprA | serA_1 | LAX5112_04584 | LAX5112_02657 | Glycerate dehydrogenase. | D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | 0.636 |
hprA | serB | LAX5112_04584 | LAX5112_01615 | Glycerate dehydrogenase. | Phosphoserine phosphatase. | 0.405 |
hprA | serC | LAX5112_04584 | LAX5112_03203 | Glycerate dehydrogenase. | Phosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine. | 0.959 |
hprA | thrC | LAX5112_04584 | LAX5112_02368 | Glycerate dehydrogenase. | Threonine synthase. | 0.631 |
pdxA1 | serC | LAX5112_03875 | LAX5112_03203 | 4-hydroxythreonine-4-phosphate dehydrogenase 1; Catalyzes the NAD(P)-dependent oxidation of 4-(phosphooxy)-L- threonine (HTP) into 2-amino-3-oxo-4-(phosphooxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP). | Phosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine. | 0.935 |
pdxA1 | thrC | LAX5112_03875 | LAX5112_02368 | 4-hydroxythreonine-4-phosphate dehydrogenase 1; Catalyzes the NAD(P)-dependent oxidation of 4-(phosphooxy)-L- threonine (HTP) into 2-amino-3-oxo-4-(phosphooxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP). | Threonine synthase. | 0.855 |
pheA | aroA | LAX5112_02813 | LAX5112_03569 | P-protein. | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.721 |
pheA | serC | LAX5112_02813 | LAX5112_03203 | P-protein. | Phosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine. | 0.871 |
pheA | thrC | LAX5112_02813 | LAX5112_02368 | P-protein. | Threonine synthase. | 0.537 |
serA_1 | ghrA | LAX5112_02657 | LAX5112_03265 | D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | Glyoxylate/hydroxypyruvate reductase A. | 0.450 |
serA_1 | hprA | LAX5112_02657 | LAX5112_04584 | D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | Glycerate dehydrogenase. | 0.636 |
serA_1 | serC | LAX5112_02657 | LAX5112_03203 | D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | Phosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine. | 0.989 |
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