STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
catD_13-oxoadipate enol-lactonase 2. (266 aa)    
Predicted Functional Partners:
CTQ74731.1
4-carboxymuconolactone decarboxylase.
 
 0.998
pcaH
Protocatechuate 3,4-dioxygenase beta chain.
 
  
 0.955
pcaG
Protocatechuate 3,4-dioxygenase alpha chain.
 
  
 0.950
pobA
P-hydroxybenzoate hydroxylase.
 
 
 0.942
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
 0.928
pcaB
3-carboxy-cis,cis-muconate cycloisomerase.
 
 
 0.858
CTQ67048.1
Hypothetical protein.
    
  0.828
CTQ65479.1
4-carboxymuconolactone decarboxylase.
 
  
 0.809
kce_3
3-keto-5-aminohexanoate cleavage enzyme.
 
     0.742
gbpR
Galactose-binding protein regulator; Belongs to the LysR transcriptional regulatory family.
 
     0.667
Your Current Organism:
Labrenzia alexandrii
NCBI taxonomy Id: 388408
Other names: DSM 17067, L. alexandrii, Labrenzia alexandrii Biebl et al. 2007, NCIMB 14079, strain DFL-11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.