STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CTQ75453.1Replication initiation protein RepC. (457 aa)    
Predicted Functional Partners:
parB_2
Chromosome-partitioning protein ParB; Belongs to the ParB family.
 
   
 0.901
soj_2
Sporulation initiation inhibitor protein soj.
 
   
 0.885
CTQ66213.1
Capsular polysaccharide biosynthesis protein.
  
     0.534
CTQ69227.1
Bacterial regulatory proteins, tetR family.
  
     0.494
CTQ77274.1
Multidrug resistance protein MdtN.
  
     0.463
lipL
Octanoyl-[GcvH]:protein N-octanoyltransferase.
  
     0.459
actP_1
Copper-transporting P-type ATPase.
  
  
 0.448
CTQ74498.1
Bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase.
  
  
  0.427
CTQ67176.1
Conjugative transfer relaxase protein TraI.
  
     0.423
Your Current Organism:
Labrenzia alexandrii
NCBI taxonomy Id: 388408
Other names: DSM 17067, L. alexandrii, Labrenzia alexandrii Biebl et al. 2007, NCIMB 14079, strain DFL-11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.