STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hcnC_1Hydrogen cyanide synthase subunit HcnC precursor. (388 aa)    
Predicted Functional Partners:
gcvT_2
Aminomethyltransferase; Belongs to the GcvT family.
  
 0.966
gcvT_7
Aminomethyltransferase; Belongs to the GcvT family.
  
 0.966
gltB_2
Ferredoxin-dependent glutamate synthase 1.
    
 0.810
mnmC
tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC.
 
     0.804
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
  
    0.703
CTQ63766.1
Sarcosine oxidase, delta subunit family.
  
 0.573
dadA_1
D-amino acid dehydrogenase small subunit.
  
  
  0.551
CTQ68328.1
Sarcosine oxidase, delta subunit family.
  
 0.540
nasA
Nitrate reductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
    
 0.532
dadA_3
D-amino acid dehydrogenase small subunit.
  
  
  0.520
Your Current Organism:
Labrenzia alexandrii
NCBI taxonomy Id: 388408
Other names: DSM 17067, L. alexandrii, Labrenzia alexandrii Biebl et al. 2007, NCIMB 14079, strain DFL-11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.