STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CTQ77077.1LysE type translocator. (198 aa)    
Predicted Functional Partners:
ydcR_2
Putative HTH-type transcriptional regulator YdcR.
 
     0.646
CTQ63906.1
HD domain protein, cyanamide hydratase family.
  
     0.528
vjbR
HTH-type quorum sensing-dependent transcriptional regulator VjbR.
  
     0.514
tcyA_4
L-cystine-binding protein TcyA precursor.
       0.486
CTQ72576.1
Integral membrane protein, PqiA family.
  
     0.473
CTQ66412.1
Hypothetical protein.
  
     0.466
CTQ68969.1
Sensors of blue-light using FAD.
  
     0.455
bioN
Energy-coupling factor transporter transmembrane protein BioN.
 
     0.453
CTQ67232.1
Site-specific recombinase XerD.
  
     0.428
CTQ69983.1
Hypothetical protein.
  
     0.402
Your Current Organism:
Labrenzia alexandrii
NCBI taxonomy Id: 388408
Other names: DSM 17067, L. alexandrii, Labrenzia alexandrii Biebl et al. 2007, NCIMB 14079, strain DFL-11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.