STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAZ81805.1Putative long-chain-fatty-acid--CoA ligase. (582 aa)    
Predicted Functional Partners:
EAZ82980.1
Putative bacitracin synthetase 3.
 
 
 0.905
EAZ82937.1
Lipase/esterase.
  
 0.873
EAZ81188.1
Hypothetical protein.
  
 
 0.842
EFQ79250.1
Putative sensory box histidine kinase/response regulator.
    
  0.828
EAZ79960.1
Sensor histidine kinase/response regulator fusion protein.
    
  0.822
EAZ82614.1
long-chain-fatty-acid--CoA ligase.
  
 
0.811
rplE
Ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.
    
 
 0.787
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
    
  0.772
EAZ79113.1
Putative PAS domain S-box.
    
 0.746
EAZ82350.1
Hypothetical protein.
   
 0.741
Your Current Organism:
Algoriphagus machipongonensis
NCBI taxonomy Id: 388413
Other names: A. machipongonensis, ATCC BAA-2233, Algoriphagus machipongonensis Alegado et al. 2013, Algoriphagus sp. PR1, DSM 24695, strain PR1
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