Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EAZ82062.1Chloromuconate cycloisomerase YkfB1. (336 aa)    
Predicted Functional Partners:
EAZ79745.1
Mandelate racemase/muconate lactonizing enzyme family protein.
     
  0.650
EAZ82061.2
Hypothetical protein.
 
     0.615
EAZ82846.1
Pipeptidyl-peptidase VI.
 
  
 0.571
EAZ80836.1
Hypothetical protein.
 
     0.560
EAZ79577.1
O-succinylbenzoic acid--CoA ligase.
  
  
  0.501
EAZ82937.1
Lipase/esterase.
    
 0.483
EAZ79074.2
Putative D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase.
 
     0.449
menB
Naphthoate synthase; Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2- naphthoyl-CoA (DHNA-CoA); Belongs to the enoyl-CoA hydratase/isomerase family. MenB subfamily.
 
  
 0.424
Your Current Organism:
Algoriphagus machipongonensis
NCBI taxonomy Id: 388413
Other names: A. machipongonensis, ATCC BAA-2233, Algoriphagus machipongonensis Alegado et al. 2013, Algoriphagus sp. PR1, DSM 24695, strain PR1
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