STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAZ82329.2RNA polymerase ECF-type sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (160 aa)    
Predicted Functional Partners:
EAZ82327.2
TonB-dependent receptor.
  
    0.786
EAZ82328.1
Hypothetical protein.
       0.773
EAZ79113.1
Putative PAS domain S-box.
  
 
 0.635
EAZ80275.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.629
EAZ80650.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.629
EAZ81431.1
Putative RNA polymerase sigma-H factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.629
EAZ79239.2
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.620
EAZ79832.1
DNA-directed RNA polymerase sigma24 subunit; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.592
EAZ80878.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.591
EAZ81128.1
RNA polymerase, sigma-E factor heat shock and oxidative stress; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.587
Your Current Organism:
Algoriphagus machipongonensis
NCBI taxonomy Id: 388413
Other names: A. machipongonensis, ATCC BAA-2233, Algoriphagus machipongonensis Alegado et al. 2013, Algoriphagus sp. PR1, DSM 24695, strain PR1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.