Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAZ79563.2Hypothetical protein. (313 aa)    
Predicted Functional Partners:
EAZ80120.2
Hypothetical protein.
 
     0.605
EAZ79562.1
Hypothetical protein.
       0.576
EAZ79841.1
HesB/YadR/YfhF family protein.
  
     0.521
EAZ79564.1
Putative hydrolase, carbon-nitrogen family.
       0.463
EAZ79110.1
Hypothetical protein.
  
     0.434
EAZ82016.1
Sensor histidine kinase.
  
     0.429
EAZ83054.1
Hypothetical protein.
  
     0.425
EAZ81112.2
Hypothetical protein.
  
     0.407
Your Current Organism:
Algoriphagus machipongonensis
NCBI taxonomy Id: 388413
Other names: A. machipongonensis, ATCC BAA-2233, Algoriphagus machipongonensis Alegado et al. 2013, Algoriphagus sp. PR1, DSM 24695, strain PR1
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