STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAZ79770.1FeS assembly protein SufD. (422 aa)    
Predicted Functional Partners:
EAZ79771.1
FeS assembly ATPase SufC.
 
 0.999
EAZ79769.1
Selenocysteine lyase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 
 0.996
EAZ79767.1
Metal-sulfur cluster biosynthetic enzyme.
   
 0.975
EAZ79768.1
Fe-S metabolism protein, SufE family.
 
   0.949
EAZ80065.1
Putative L-cysteine/cystine lyase.
 
 0.770
EAZ79772.1
FeS assembly protein SufB.
 
   
0.739
EAZ79766.1
Hypothetical protein; Belongs to the UPF0403 family.
  
    0.715
EAZ82913.1
Isopenicillin N-epimerase.
 
 0.695
EAZ79907.1
Aminotransferase, class V.
  
 
 0.588
EAZ80055.1
Iron-sulfur cluster assembly accessory protein; Belongs to the HesB/IscA family.
  
 
 0.496
Your Current Organism:
Algoriphagus machipongonensis
NCBI taxonomy Id: 388413
Other names: A. machipongonensis, ATCC BAA-2233, Algoriphagus machipongonensis Alegado et al. 2013, Algoriphagus sp. PR1, DSM 24695, strain PR1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.