STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAZ82661.1Transcriptional regulator, AraC family. (190 aa)    
Predicted Functional Partners:
EAZ82660.1
Cyclic nucleotide binding regulatory protein.
 
    0.804
EAZ82662.1
TonB-dependent receptor.
       0.773
EAZ81936.1
Ferredoxin-dependent glutamate synthase 1.
    
  0.768
EAZ82658.1
Copper-exporting ATPase.
 
     0.615
EAZ82657.1
Hypothetical protein.
 
     0.591
EAZ82659.2
Putative formamidopyrimidine-DNA glycosylase.
       0.574
EAZ81441.1
AraC family transcriptional regulator.
  
   0.526
EAZ81957.1
Putative cyclic nucleotide binding-regulatory protein.
  
    0.492
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.487
EAZ82305.1
Transcriptional regulator, AraC family.
  
   0.468
Your Current Organism:
Algoriphagus machipongonensis
NCBI taxonomy Id: 388413
Other names: A. machipongonensis, ATCC BAA-2233, Algoriphagus machipongonensis Alegado et al. 2013, Algoriphagus sp. PR1, DSM 24695, strain PR1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.