Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EAZ83261.1Xanthan lyase. (770 aa)    
Predicted Functional Partners:
EAZ80726.1
Cytochrome c oxidase, Cbb3-type, subunit I/II; Belongs to the heme-copper respiratory oxidase family.
  
 0.966
EAZ83262.1
Twin-arginine translocation pathway signal.
 
     0.949
EAZ83263.1
Hypothetical protein.
 
    
0.844
EAZ80432.2
Twin-arginine translocation pathway signal.
 
  0.839
EAZ80165.1
Twin-arginine translocation pathway signal.
 
     0.786
EAZ80167.1
Hypothetical protein.
 
     0.779
EAZ79822.1
Putative Tat (twin-arginine translocation) pathway signal sequence containing protein.
 
     0.714
EAZ83002.2
L-sorbosone dehydrogenase.
 
  0.654
EAZ81936.1
Ferredoxin-dependent glutamate synthase 1.
     
  0.646
EAZ79342.1
Oxidoreductase alpha (molybdopterin) subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
  0.596
Your Current Organism:
Algoriphagus machipongonensis
NCBI taxonomy Id: 388413
Other names: A. machipongonensis, ATCC BAA-2233, Algoriphagus machipongonensis Alegado et al. 2013, Algoriphagus sp. PR1, DSM 24695, strain PR1
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