Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAZ80878.1RNA polymerase sigma-70 factor, ECF subfamily. (189 aa)    
Predicted Functional Partners:
EAZ80879.1
Hypothetical protein.
   
   0.852
EAZ80880.2
Hypothetical protein.
       0.784
EAZ79239.2
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.774
EAZ81726.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.769
EAZ80831.1
RNA polymerase ECF-type sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.743
EAZ80881.1
Hypothetical protein.
       0.712
EAZ79317.1
RNA polymerase ECF-type sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.652
EAZ80882.1
Hypothetical protein.
       0.649
EAZ82329.2
RNA polymerase ECF-type sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.591
EAZ79113.1
Putative PAS domain S-box.
  
 
 0.590
Your Current Organism:
Algoriphagus machipongonensis
NCBI taxonomy Id: 388413
Other names: A. machipongonensis, ATCC BAA-2233, Algoriphagus machipongonensis Alegado et al. 2013, Algoriphagus sp. PR1, DSM 24695, strain PR1
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