STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A19Y_0473D-alanyl-D-alanine carboxypeptidase. (476 aa)    
Predicted Functional Partners:
dac
Dac.
  
  
  0.856
A19Y_0474
Uncharacterized protein conserved in bacteria.
       0.773
A19Y_2464
Microcin C7 resistance protein MccF.
 
  
 0.765
ldcA
LdcA.
 
  
 0.749
A19Y_2117
Hypothetical protein; Ankyrin repeat.
   
   0.747
comB
2-phosphosulfolactate phosphatase; Belongs to the ComB family.
       0.535
purU
Formyltetrahydrofolate deformylase; Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4).
       0.523
A19Y_2131
Uncharacterized protein conserved in bacteria.
     
 0.508
A19Y_2888
Uncharacterized protein conserved in bacteria.
     
 0.508
A19Y_4608
Uncharacterized protein conserved in bacteria.
     
 0.508
Your Current Organism:
Planktothrix agardhii
NCBI taxonomy Id: 388467
Other names: P. agardhii NIVA-CYA 126/8, Planktothrix agardhii NIVA-CYA 126/8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.