STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A19Y_1401WD40 repeat-containing protein. (580 aa)    
Predicted Functional Partners:
alaS
AlaS; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.964
A19Y_2117
Hypothetical protein; Ankyrin repeat.
   
 0.956
A19Y_2738
Ubiquitin-protein ligase.
   
 0.947
ogt-4
Ogt.
 
 0.877
A19Y_3667
Hypothetical protein; 'Trypsin-like serine proteases; typically periplasmic; contain C-terminal PDZ domain'.
  
 
0.872
A19Y_2515
Putative WD40 repeat-containing protein.
 
 
  0.865
A19Y_0144
COP9 signalosome complex subunit 5b.
   
  0.856
A19Y_2739
COP9 signalosome complex subunit 5.
   
  0.856
A19Y_2309
Uncharacterized protein containing caspase domain.
 
  0.829
rplF
RplF; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.823
Your Current Organism:
Planktothrix agardhii
NCBI taxonomy Id: 388467
Other names: P. agardhii NIVA-CYA 126/8, Planktothrix agardhii NIVA-CYA 126/8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.