Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
A19Y_0711 | gyrB | A19Y_0711 | A19Y_3152 | Methylenetetrahydrofolate reductase; Belongs to the methylenetetrahydrofolate reductase family. | GyrB. | 0.454 |
A19Y_0711 | miaA | A19Y_0711 | A19Y_3151 | Methylenetetrahydrofolate reductase; Belongs to the methylenetetrahydrofolate reductase family. | MiaA; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | 0.562 |
A19Y_0711 | pheT | A19Y_0711 | A19Y_4070 | Methylenetetrahydrofolate reductase; Belongs to the methylenetetrahydrofolate reductase family. | PheT; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. | 0.466 |
A19Y_0785 | hflX | A19Y_0785 | A19Y_0503 | Hypothetical protein. | HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family. | 0.476 |
A19Y_0785 | miaA | A19Y_0785 | A19Y_3151 | Hypothetical protein. | MiaA; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | 0.686 |
A19Y_0785 | pcnB | A19Y_0785 | A19Y_0882 | Hypothetical protein. | PcnB; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. | 0.663 |
dnaG | gyrB | A19Y_3456 | A19Y_3152 | DnaG; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | GyrB. | 0.673 |
dnaG | miaA | A19Y_3456 | A19Y_3151 | DnaG; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | MiaA; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | 0.581 |
dnaG | pheT | A19Y_3456 | A19Y_4070 | DnaG; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | PheT; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. | 0.578 |
dnaG | polA | A19Y_3456 | A19Y_0397 | DnaG; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | PolA; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.933 |
gyrB | A19Y_0711 | A19Y_3152 | A19Y_0711 | GyrB. | Methylenetetrahydrofolate reductase; Belongs to the methylenetetrahydrofolate reductase family. | 0.454 |
gyrB | dnaG | A19Y_3152 | A19Y_3456 | GyrB. | DnaG; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | 0.673 |
gyrB | miaA | A19Y_3152 | A19Y_3151 | GyrB. | MiaA; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | 0.648 |
gyrB | pheT | A19Y_3152 | A19Y_4070 | GyrB. | PheT; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. | 0.702 |
gyrB | polA | A19Y_3152 | A19Y_0397 | GyrB. | PolA; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.837 |
hflX | A19Y_0785 | A19Y_0503 | A19Y_0785 | HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family. | Hypothetical protein. | 0.476 |
hflX | miaA | A19Y_0503 | A19Y_3151 | HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family. | MiaA; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | 0.771 |
hflX | ybeY | A19Y_0503 | A19Y_4676 | HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family. | Metalloprotease; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.432 |
miaA | A19Y_0711 | A19Y_3151 | A19Y_0711 | MiaA; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | Methylenetetrahydrofolate reductase; Belongs to the methylenetetrahydrofolate reductase family. | 0.562 |
miaA | A19Y_0785 | A19Y_3151 | A19Y_0785 | MiaA; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | Hypothetical protein. | 0.686 |
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