STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BS1BIG SEEDS 1. (335 aa)    
Predicted Functional Partners:
V7CGW4_PHAVU
Ubiquitin-like domain-containing protein.
    
  0.970
V7B351_PHAVU
Fanconi-associated nuclease; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family.
    
 0.965
V7BVM2_PHAVU
Ribosomal protein; Belongs to the universal ribosomal protein uL1 family.
    
 0.940
V7D2U5_PHAVU
Ribosomal protein; Belongs to the universal ribosomal protein uL1 family.
    
 0.940
V7D1G5_PHAVU
MPN domain-containing protein.
    
 0.920
V7AS46_PHAVU
Ubiquitin-like domain-containing protein.
    
  0.898
V7D161_PHAVU
Ubiquitin-like domain-containing protein.
    
  0.898
V7CZ66_PHAVU
Uncharacterized protein.
  
 
 0.884
V7BJ86_PHAVU
Uncharacterized protein.
   
 
 0.871
V7BN67_PHAVU
Uncharacterized protein.
   
 
 0.871
Your Current Organism:
Phaseolus vulgaris
NCBI taxonomy Id: 3885
Other names: French bean, P. vulgaris, Phaseolus vulgaris L., kidney bean, string bean
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