V7BPC6_PHAVU protein (Phaseolus vulgaris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

V7BPC6_PHAVU

Uncharacterized protein. (315 aa)

Predicted Functional Partners:

V7C2E6_PHAVU

0.481

V7AU32_PHAVU

0.477

V7C1S0_PHAVU

0.444

V7B163_PHAVU

0.442

V7CA49_PHAVU

0.440

V7CY98_PHAVU

0.437

V7BBX5_PHAVU

0.436

V7BLZ9_PHAVU

0.436

V7BGG4_PHAVU

0.433

V7BUE7_PHAVU

0.432

Your Current Organism:

Phaseolus vulgaris

NCBI taxonomy Id: 3885
Other names: French bean, P. vulgaris, Phaseolus vulgaris L., kidney bean, string bean

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
V7AU32_PHAVU	V7BBX5_PHAVU	V7AU32	V7BBX5	Uncharacterized protein.	F-box domain-containing protein.	0.507
V7AU32_PHAVU	V7BPC6_PHAVU	V7AU32	V7BPC6	Uncharacterized protein.	Uncharacterized protein.	0.477
V7AU32_PHAVU	V7BUE7_PHAVU	V7AU32	V7BUE7	Uncharacterized protein.	DUF4408 domain-containing protein.	0.414
V7AU32_PHAVU	V7C2E6_PHAVU	V7AU32	V7C2E6	Uncharacterized protein.	F-box domain-containing protein.	0.525
V7B163_PHAVU	V7BPC6_PHAVU	V7B163	V7BPC6	Uncharacterized protein.	Uncharacterized protein.	0.442
V7B163_PHAVU	V7BUE7_PHAVU	V7B163	V7BUE7	Uncharacterized protein.	DUF4408 domain-containing protein.	0.517
V7BBX5_PHAVU	V7AU32_PHAVU	V7BBX5	V7AU32	F-box domain-containing protein.	Uncharacterized protein.	0.507
V7BBX5_PHAVU	V7BPC6_PHAVU	V7BBX5	V7BPC6	F-box domain-containing protein.	Uncharacterized protein.	0.436
V7BGG4_PHAVU	V7BPC6_PHAVU	V7BGG4	V7BPC6	Uncharacterized protein.	Uncharacterized protein.	0.433
V7BGG4_PHAVU	V7BUE7_PHAVU	V7BGG4	V7BUE7	Uncharacterized protein.	DUF4408 domain-containing protein.	0.454
V7BGG4_PHAVU	V7CA49_PHAVU	V7BGG4	V7CA49	Uncharacterized protein.	Uncharacterized protein.	0.621
V7BGG4_PHAVU	V7CY98_PHAVU	V7BGG4	V7CY98	Uncharacterized protein.	Dirigent protein; Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism.	0.429
V7BLZ9_PHAVU	V7BPC6_PHAVU	V7BLZ9	V7BPC6	AAI domain-containing protein.	Uncharacterized protein.	0.436
V7BLZ9_PHAVU	V7CA49_PHAVU	V7BLZ9	V7CA49	AAI domain-containing protein.	Uncharacterized protein.	0.552
V7BLZ9_PHAVU	V7CY98_PHAVU	V7BLZ9	V7CY98	AAI domain-containing protein.	Dirigent protein; Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism.	0.435
V7BPC6_PHAVU	V7AU32_PHAVU	V7BPC6	V7AU32	Uncharacterized protein.	Uncharacterized protein.	0.477
V7BPC6_PHAVU	V7B163_PHAVU	V7BPC6	V7B163	Uncharacterized protein.	Uncharacterized protein.	0.442
V7BPC6_PHAVU	V7BBX5_PHAVU	V7BPC6	V7BBX5	Uncharacterized protein.	F-box domain-containing protein.	0.436
V7BPC6_PHAVU	V7BGG4_PHAVU	V7BPC6	V7BGG4	Uncharacterized protein.	Uncharacterized protein.	0.433
V7BPC6_PHAVU	V7BLZ9_PHAVU	V7BPC6	V7BLZ9	Uncharacterized protein.	AAI domain-containing protein.	0.436