STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
V7BZ86_PHAVURBR-type E3 ubiquitin transferase. (590 aa)    
Predicted Functional Partners:
V7CGW4_PHAVU
Ubiquitin-like domain-containing protein.
    
 0.807
V7AS46_PHAVU
Ubiquitin-like domain-containing protein.
    
  0.707
V7D161_PHAVU
Ubiquitin-like domain-containing protein.
    
  0.707
V7BFA6_PHAVU
HECT domain-containing protein.
   
 
 0.666
V7BJ05_PHAVU
HECT domain-containing protein.
   
 
 0.666
V7AHZ5_PHAVU
HECT domain-containing protein.
   
 
 0.648
V7AXK8_PHAVU
HECT domain-containing protein.
   
 
 0.648
T2DNF2_PHAVU
RING-box protein 1.
    
 0.599
V7AH14_PHAVU
RING-type domain-containing protein.
    
 0.599
V7C7E7_PHAVU
E2_bind domain-containing protein.
     
 0.567
Your Current Organism:
Phaseolus vulgaris
NCBI taxonomy Id: 3885
Other names: French bean, P. vulgaris, Phaseolus vulgaris L., kidney bean, string bean
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