V7CCJ4_PHAVU protein (Phaseolus vulgaris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

V7CCJ4_PHAVU

AB hydrolase-1 domain-containing protein. (278 aa)

Predicted Functional Partners:

V7AJ07_PHAVU

0.454

V7CIV0_PHAVU

0.414

V7AMQ8_PHAVU

0.413

V7B898_PHAVU

0.406

V7AVA5_PHAVU

0.405

Your Current Organism:

Phaseolus vulgaris

NCBI taxonomy Id: 3885
Other names: French bean, P. vulgaris, Phaseolus vulgaris L., kidney bean, string bean

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
V7AJ07_PHAVU	V7AVA5_PHAVU	V7AJ07	V7AVA5	F-box domain-containing protein.	Uncharacterized protein.	0.558
V7AJ07_PHAVU	V7CCJ4_PHAVU	V7AJ07	V7CCJ4	F-box domain-containing protein.	AB hydrolase-1 domain-containing protein.	0.454
V7AJ07_PHAVU	V7CIV0_PHAVU	V7AJ07	V7CIV0	F-box domain-containing protein.	Uncharacterized protein.	0.450
V7AMQ8_PHAVU	V7CCJ4_PHAVU	V7AMQ8	V7CCJ4	Uncharacterized protein.	AB hydrolase-1 domain-containing protein.	0.413
V7AVA5_PHAVU	V7AJ07_PHAVU	V7AVA5	V7AJ07	Uncharacterized protein.	F-box domain-containing protein.	0.558
V7AVA5_PHAVU	V7CCJ4_PHAVU	V7AVA5	V7CCJ4	Uncharacterized protein.	AB hydrolase-1 domain-containing protein.	0.405
V7B898_PHAVU	V7CCJ4_PHAVU	V7B898	V7CCJ4	Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.	AB hydrolase-1 domain-containing protein.	0.406
V7CCJ4_PHAVU	V7AJ07_PHAVU	V7CCJ4	V7AJ07	AB hydrolase-1 domain-containing protein.	F-box domain-containing protein.	0.454
V7CCJ4_PHAVU	V7AMQ8_PHAVU	V7CCJ4	V7AMQ8	AB hydrolase-1 domain-containing protein.	Uncharacterized protein.	0.413
V7CCJ4_PHAVU	V7AVA5_PHAVU	V7CCJ4	V7AVA5	AB hydrolase-1 domain-containing protein.	Uncharacterized protein.	0.405
V7CCJ4_PHAVU	V7B898_PHAVU	V7CCJ4	V7B898	AB hydrolase-1 domain-containing protein.	Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.	0.406
V7CCJ4_PHAVU	V7CIV0_PHAVU	V7CCJ4	V7CIV0	AB hydrolase-1 domain-containing protein.	Uncharacterized protein.	0.414
V7CIV0_PHAVU	V7AJ07_PHAVU	V7CIV0	V7AJ07	Uncharacterized protein.	F-box domain-containing protein.	0.450
V7CIV0_PHAVU	V7CCJ4_PHAVU	V7CIV0	V7CCJ4	Uncharacterized protein.	AB hydrolase-1 domain-containing protein.	0.414