STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
V7CDJ7_PHAVUUncharacterized protein. (745 aa)    
Predicted Functional Partners:
V7CKF5_PHAVU
RPOLD domain-containing protein.
    
 0.946
V7AL44_PHAVU
RPOL4c domain-containing protein.
    
 0.945
V7AD36_PHAVU
RNA_pol_L_2 domain-containing protein.
    
 0.925
V7AUR0_PHAVU
Uncharacterized protein.
    
 0.918
V7C708_PHAVU
Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family.
    
 0.848
V7CVL5_PHAVU
Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family.
    
 0.848
V7BSL8_PHAVU
RPOL4c domain-containing protein.
    
 0.844
V7BNG0_PHAVU
RPOLD domain-containing protein.
    
 0.839
V7AYN7_PHAVU
TPR_REGION domain-containing protein.
    
 0.834
V7CIA8_PHAVU
Uncharacterized protein.
    
 0.834
Your Current Organism:
Phaseolus vulgaris
NCBI taxonomy Id: 3885
Other names: French bean, P. vulgaris, Phaseolus vulgaris L., kidney bean, string bean
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