V7CKN1_PHAVU protein (Phaseolus vulgaris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

V7CKN1_PHAVU

Uncharacterized protein. (70 aa)

Predicted Functional Partners:

V7BGV9_PHAVU

0.714

V7D1G5_PHAVU

0.700

BS1

0.658

V7ACN6_PHAVU

0.616

V7BVM2_PHAVU

0.611

V7D2U5_PHAVU

0.611

V7CHY6_PHAVU

0.571

T2DM56_PHAVU

0.569

V7AWN7_PHAVU

0.569

V7C072_PHAVU

0.569

Your Current Organism:

Phaseolus vulgaris

NCBI taxonomy Id: 3885
Other names: French bean, P. vulgaris, Phaseolus vulgaris L., kidney bean, string bean

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BS1	V7ACN6_PHAVU	V7BBR6	V7ACN6	BIG SEEDS 1.	Uncharacterized protein.	0.778
BS1	V7BGV9_PHAVU	V7BBR6	V7BGV9	BIG SEEDS 1.	Uncharacterized protein.	0.843
BS1	V7BVM2_PHAVU	V7BBR6	V7BVM2	BIG SEEDS 1.	Ribosomal protein; Belongs to the universal ribosomal protein uL1 family.	0.940
BS1	V7CHY6_PHAVU	V7BBR6	V7CHY6	BIG SEEDS 1.	Uncharacterized protein.	0.408
BS1	V7CKN1_PHAVU	V7BBR6	V7CKN1	BIG SEEDS 1.	Uncharacterized protein.	0.658
BS1	V7D1G5_PHAVU	V7BBR6	V7D1G5	BIG SEEDS 1.	MPN domain-containing protein.	0.920
BS1	V7D2U5_PHAVU	V7BBR6	V7D2U5	BIG SEEDS 1.	Ribosomal protein; Belongs to the universal ribosomal protein uL1 family.	0.940
T2DM56_PHAVU	V7AWN7_PHAVU	T2DM56	V7AWN7	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	0.900
T2DM56_PHAVU	V7CKN1_PHAVU	T2DM56	V7CKN1	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	Uncharacterized protein.	0.569
V7ACN6_PHAVU	BS1	V7ACN6	V7BBR6	Uncharacterized protein.	BIG SEEDS 1.	0.778
V7ACN6_PHAVU	V7BGV9_PHAVU	V7ACN6	V7BGV9	Uncharacterized protein.	Uncharacterized protein.	0.964
V7ACN6_PHAVU	V7BVM2_PHAVU	V7ACN6	V7BVM2	Uncharacterized protein.	Ribosomal protein; Belongs to the universal ribosomal protein uL1 family.	0.898
V7ACN6_PHAVU	V7CHY6_PHAVU	V7ACN6	V7CHY6	Uncharacterized protein.	Uncharacterized protein.	0.724
V7ACN6_PHAVU	V7CKN1_PHAVU	V7ACN6	V7CKN1	Uncharacterized protein.	Uncharacterized protein.	0.616
V7ACN6_PHAVU	V7D1G5_PHAVU	V7ACN6	V7D1G5	Uncharacterized protein.	MPN domain-containing protein.	0.950
V7ACN6_PHAVU	V7D2U5_PHAVU	V7ACN6	V7D2U5	Uncharacterized protein.	Ribosomal protein; Belongs to the universal ribosomal protein uL1 family.	0.898
V7AWN7_PHAVU	T2DM56_PHAVU	V7AWN7	T2DM56	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	0.900
V7AWN7_PHAVU	V7CKN1_PHAVU	V7AWN7	V7CKN1	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	Uncharacterized protein.	0.569
V7BGV9_PHAVU	BS1	V7BGV9	V7BBR6	Uncharacterized protein.	BIG SEEDS 1.	0.843
V7BGV9_PHAVU	V7ACN6_PHAVU	V7BGV9	V7ACN6	Uncharacterized protein.	Uncharacterized protein.	0.964