V7CW48_PHAVU protein (Phaseolus vulgaris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

V7CW48_PHAVU

3'-5' exonuclease domain-containing protein. (504 aa)

Predicted Functional Partners:

V7CYH7_PHAVU

0.620

V7BG83_PHAVU

0.600

V7C4Y8_PHAVU

0.596

V7AUS2_PHAVU

0.544

V7AXI4_PHAVU

0.544

V7B9P1_PHAVU

0.541

V7C072_PHAVU

0.541

V7CBE1_PHAVU

0.529

V7BG72_PHAVU

0.495

V7BGD6_PHAVU

0.495

Your Current Organism:

Phaseolus vulgaris

NCBI taxonomy Id: 3885
Other names: French bean, P. vulgaris, Phaseolus vulgaris L., kidney bean, string bean

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
V7AUS2_PHAVU	V7B9P1_PHAVU	V7AUS2	V7B9P1	Uncharacterized protein.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.675
V7AUS2_PHAVU	V7BG72_PHAVU	V7AUS2	V7BG72	Uncharacterized protein.	SMC_N domain-containing protein.	0.627
V7AUS2_PHAVU	V7BG83_PHAVU	V7AUS2	V7BG83	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.732
V7AUS2_PHAVU	V7BGD6_PHAVU	V7AUS2	V7BGD6	Uncharacterized protein.	SMC hinge domain-containing protein.	0.627
V7AUS2_PHAVU	V7C072_PHAVU	V7AUS2	V7C072	Uncharacterized protein.	Ribosomal_L7Ae domain-containing protein.	0.675
V7AUS2_PHAVU	V7C4Y8_PHAVU	V7AUS2	V7C4Y8	Uncharacterized protein.	Uncharacterized protein.	0.638
V7AUS2_PHAVU	V7CBE1_PHAVU	V7AUS2	V7CBE1	Uncharacterized protein.	Nop domain-containing protein.	0.711
V7AUS2_PHAVU	V7CW48_PHAVU	V7AUS2	V7CW48	Uncharacterized protein.	3'-5' exonuclease domain-containing protein.	0.544
V7AUS2_PHAVU	V7CYH7_PHAVU	V7AUS2	V7CYH7	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.688
V7AXI4_PHAVU	V7B9P1_PHAVU	V7AXI4	V7B9P1	Uncharacterized protein.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.675
V7AXI4_PHAVU	V7BG72_PHAVU	V7AXI4	V7BG72	Uncharacterized protein.	SMC_N domain-containing protein.	0.627
V7AXI4_PHAVU	V7BG83_PHAVU	V7AXI4	V7BG83	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.732
V7AXI4_PHAVU	V7BGD6_PHAVU	V7AXI4	V7BGD6	Uncharacterized protein.	SMC hinge domain-containing protein.	0.627
V7AXI4_PHAVU	V7C072_PHAVU	V7AXI4	V7C072	Uncharacterized protein.	Ribosomal_L7Ae domain-containing protein.	0.675
V7AXI4_PHAVU	V7C4Y8_PHAVU	V7AXI4	V7C4Y8	Uncharacterized protein.	Uncharacterized protein.	0.638
V7AXI4_PHAVU	V7CBE1_PHAVU	V7AXI4	V7CBE1	Uncharacterized protein.	Nop domain-containing protein.	0.711
V7AXI4_PHAVU	V7CW48_PHAVU	V7AXI4	V7CW48	Uncharacterized protein.	3'-5' exonuclease domain-containing protein.	0.544
V7AXI4_PHAVU	V7CYH7_PHAVU	V7AXI4	V7CYH7	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.688
V7B9P1_PHAVU	V7AUS2_PHAVU	V7B9P1	V7AUS2	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	Uncharacterized protein.	0.675
V7B9P1_PHAVU	V7AXI4_PHAVU	V7B9P1	V7AXI4	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	Uncharacterized protein.	0.675