STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SSA_0004Lipoprotein, putative; GC: 33.13%; Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.811. LipoP prediction: SpII. SignalP prediction: Yes (prob. 1); Curator(s): J. Alves. (163 aa)    
Predicted Functional Partners:
gtfP
Glucosyltransferase, putative; GC: 44.13%; Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.796. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.998); Curator(s): P. Xu; Protein involved in transferase activity and dextransucrase activity.
  
     0.636
ychF
GTP-binding protein, putative; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.
       0.586
SSA_0179
Conserved hypothetical protein; GC: 40.18%; Transmembrane domains: 3. Codon Adaptation Index (CAI): 0.761. Curator(s): M. Serrano, J. Alves; possibly membrane-associated.
  
     0.472
SSA_0994
Peptidase E, putative; GC: 41.55%; Codon Adaptation Index (CAI): 0.786. Curator(s): T. Kitten; Belongs to the peptidase S51 family.
  
     0.455
pth
Peptidyl-tRNA hydrolase, putative; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
       0.415
trcF
Transcription-repair coupling factor, putative; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.
       0.415
SSA_0258
Conserved hypothetical protein; GC: 47.27%; Codon Adaptation Index (CAI): 0.787. Curator(s): P. Manque.
  
     0.403
Your Current Organism:
Streptococcus sanguinis SK36
NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36
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