Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SSA_0052Transcriptional regulator, GntR family, putative; GC: 42.4%; Codon Adaptation Index (CAI): 0.784. Curator(s): J. Alves; Protein involved in regulation of transcription. (238 aa)    
Predicted Functional Partners:
SSA_0055
PTS system, IIC component, putative; GC: 45.14%; Transporter classification TC:4.A.6.1.2. Transmembrane domains: 7. Codon Adaptation Index (CAI): 0.767. Curator(s): J. Alves.
 
    0.809
SSA_0053
Beta-galactosidase, putative; GC: 48.1%; Codon Adaptation Index (CAI): 0.764. Curator(s): J. Alves; Protein involved in hydrolase activity and hydrolase activity, acting on glycosyl bonds; Belongs to the glycosyl hydrolase 35 family.
     
 0.785
SSA_0054
Phosphotransferase system sugar-specific EIIB component, putative; GC: 47.59%; Transporter classification TC:4.A.6.1.2. Codon Adaptation Index (CAI): 0.764. Curator(s): J. Alves; Protein involved in phosphoenolpyruvate-dependent sugar phosphotransferase system.
 
    0.770
SSA_0057
Phosphotransferase system sugar-specific EII component, putative; GC: 42.72%; Transporter classification TC:4.A.6.1.2. Codon Adaptation Index (CAI): 0.789. Curator(s): J. Alves; Protein involved in transferase activity.
 
     0.768
SSA_0056
Phosphotransferase system sugar-specific EIID component, putative; GC: 42.18%; Transporter classification TC:4.A.6.1.1. Transmembrane domains: 5. Codon Adaptation Index (CAI): 0.793. Curator(s): J. Alves; Protein involved in transferase activity.
 
    0.767
agaS
Tagatose-6-phosphate ketose/aldose isomerase, putative; GC: 49.79%; Codon Adaptation Index (CAI): 0.771. Curator(s): J. Alves.
 
  
 0.652
nadR
ATPase/kinase, putative; GC: 45.33%; Codon Adaptation Index (CAI): 0.804. Possibly involved in NAD metabolism. Curator(s): J. Alves; Protein involved in nucleotidyltransferase activity and regulation of transcription.
   
    0.624
ugpQ
Membrane-anchored glycerophosphoryl diester phosphodiesterase, putative; GC: 44.84%; Transmembrane domains: 7. Codon Adaptation Index (CAI): 0.752. SignalP prediction: Yes (prob. 0.982); Curator(s): T. Kitten, J. Alves; Protein involved in glycerophosphodiester phosphodiesterase activity.
      
 0.619
treR
Transcriptional regulator, GntR family (repressor of trehalose operon), putative; GC: 44.91%; Codon Adaptation Index (CAI): 0.791. Curator(s): J. Alves; Protein involved in regulation of transcription and regulation of transcription, DNA-dependent.
  
     0.609
galM
Aldose 1-epimerase, putative; Converts alpha-aldose to the beta-anomer.
 
   
 0.591
Your Current Organism:
Streptococcus sanguinis SK36
NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36
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