STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SSA_0073Conserved hypothetical protein; GC: 31.13%; Codon Adaptation Index (CAI): 0.778. Curator(s): J. Alves; Protein involved in molecular function unknown. (150 aa)    
Predicted Functional Partners:
nanE
N-acetylmannosamine-6-p hosphate 2-epimerase 1, putative; Converts N-acetylmannosamine-6-phosphate (ManNAc-6-P) to N- acetylglucosamine-6-phosphate (GlcNAc-6-P).
 
  
 0.822
SSA_0074
ABC transporter substrate-binding protein-sugar transport, putative; GC: 36.15%; Transporter classification TC:3.A.1.1.21. Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.807. LipoP prediction: SpII. SignalP prediction: Yes (prob. 1); Curator(s): J. Alves; Protein involved in transport.
       0.767
SSA_0078
N-acetylneuraminate lyase, putative; GC: 46.51%; Codon Adaptation Index (CAI): 0.782. Curator(s): J. Alves; Protein involved in lyase activity.
 
  
 0.764
SSA_0072
ABC sugar transporter, MsmK-like protein, putative; GC: 42.5%; Transporter classification TC:3.A.1.1.2. Codon Adaptation Index (CAI): 0.776. Curator(s): J. Alves; Protein involved in nucleoside-triphosphatase activity; Belongs to the ABC transporter superfamily.
       0.697
glk
ROK family protein, putative; GC: 46.67%; Codon Adaptation Index (CAI): 0.804. Curator(s): J. Alves; Protein involved in transferase activity and kinase activity.
 
    0.609
SSA_0076
ABC sugar transporter, permease protein, putative; GC: 36.81%; Transporter classification TC:3.A.1.1.17. Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.735. Curator(s): J. Alves.
       0.566
axe1
Acetylxylan esterase, putative; GC: 43.81%; Codon Adaptation Index (CAI): 0.796. Curator(s): J. Alves; Protein involved in hydrolase activity.
 
     0.565
SSA_0075
ABC sugar transporter, permease protein, putative; GC: 37.97%; Transporter classification TC:3.A.1.1.19. Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.772. SignalP prediction: Yes (prob. 0.555); Curator(s): J. Alves.
       0.559
SSA_0077
Oxidoreductase, putative; GC: 39.4%; Codon Adaptation Index (CAI): 0.816. Curator(s): J. Alves; Protein involved in oxidoreductase activity.
 
     0.507
Your Current Organism:
Streptococcus sanguinis SK36
NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36
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