SSA_0103 protein (Streptococcus sanguinis SK36)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

SSA_0103

Integral membrane protein, putative; GC: 42.28%; Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.727. SignalP prediction: Yes (prob. 0.47); Curator(s): M. Serrano. (286 aa)

Predicted Functional Partners:

tgt

0.723

SSA_0105

0.548

dnaB

0.498

SSA_1076

0.452

Your Current Organism:

Streptococcus sanguinis SK36

NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SSA_0103	SSA_0105	SSA_0103	SSA_0105	Integral membrane protein, putative; GC: 42.28%; Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.727. SignalP prediction: Yes (prob. 0.47); Curator(s): M. Serrano.	Uridine kinase, putative; GC: 47.26%; Codon Adaptation Index (CAI): 0.723. Curator(s): M. Serrano; Protein involved in transferase activity.	0.548
SSA_0103	SSA_1076	SSA_0103	SSA_1076	Integral membrane protein, putative; GC: 42.28%; Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.727. SignalP prediction: Yes (prob. 0.47); Curator(s): M. Serrano.	Conserved hypothetical protein; GC: 44.94%; Codon Adaptation Index (CAI): 0.778; Protein involved in hydrolase activity and fatty acid biosynthesis.	0.452
SSA_0103	dnaB	SSA_0103	SSA_1806	Integral membrane protein, putative; GC: 42.28%; Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.727. SignalP prediction: Yes (prob. 0.47); Curator(s): M. Serrano.	Replication initiation/membrane attachment protein DnaB, putative; GC: 30.63%; Codon Adaptation Index (CAI): 0.786. Curator(s): J. Alves.	0.498
SSA_0103	tgt	SSA_0103	SSA_0104	Integral membrane protein, putative; GC: 42.28%; Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.727. SignalP prediction: Yes (prob. 0.47); Curator(s): M. Serrano.	Queuine tRNA-ribosyltransferase, putative; Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose [...]	0.723
SSA_0105	SSA_0103	SSA_0105	SSA_0103	Uridine kinase, putative; GC: 47.26%; Codon Adaptation Index (CAI): 0.723. Curator(s): M. Serrano; Protein involved in transferase activity.	Integral membrane protein, putative; GC: 42.28%; Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.727. SignalP prediction: Yes (prob. 0.47); Curator(s): M. Serrano.	0.548
SSA_0105	tgt	SSA_0105	SSA_0104	Uridine kinase, putative; GC: 47.26%; Codon Adaptation Index (CAI): 0.723. Curator(s): M. Serrano; Protein involved in transferase activity.	Queuine tRNA-ribosyltransferase, putative; Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose [...]	0.820
SSA_1076	SSA_0103	SSA_1076	SSA_0103	Conserved hypothetical protein; GC: 44.94%; Codon Adaptation Index (CAI): 0.778; Protein involved in hydrolase activity and fatty acid biosynthesis.	Integral membrane protein, putative; GC: 42.28%; Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.727. SignalP prediction: Yes (prob. 0.47); Curator(s): M. Serrano.	0.452
dnaB	SSA_0103	SSA_1806	SSA_0103	Replication initiation/membrane attachment protein DnaB, putative; GC: 30.63%; Codon Adaptation Index (CAI): 0.786. Curator(s): J. Alves.	Integral membrane protein, putative; GC: 42.28%; Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.727. SignalP prediction: Yes (prob. 0.47); Curator(s): M. Serrano.	0.498
tgt	SSA_0103	SSA_0104	SSA_0103	Queuine tRNA-ribosyltransferase, putative; Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose [...]	Integral membrane protein, putative; GC: 42.28%; Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.727. SignalP prediction: Yes (prob. 0.47); Curator(s): M. Serrano.	0.723
tgt	SSA_0105	SSA_0104	SSA_0105	Queuine tRNA-ribosyltransferase, putative; Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose [...]	Uridine kinase, putative; GC: 47.26%; Codon Adaptation Index (CAI): 0.723. Curator(s): M. Serrano; Protein involved in transferase activity.	0.820

Server load: low (36%) [HD]

Permalink

Network

Neighborhood

Experiments

Co-occurrence

Databases

Co-expression

Textmining

Fusion

© STRING Consortium 2026

Credits

Access

Info

About