Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SSA_0155Conserved hypothetical protein; GC: 40.98%; Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.721. Curator(s): M. Serrano, J. Alves. (121 aa)    
Predicted Functional Partners:
SSA_0156
ATPase with chaperone activity, ATP-binding subunit, putative; GC: 44.5%; Codon Adaptation Index (CAI): 0.78. Helix-turn-helix prediction: AraC. Curator(s): M. Serrano, J. Alves; Protein involved in nucleoside-triphosphatase activity and protein metabolism; Belongs to the ClpA/ClpB family.
       0.773
SSA_0159
Conserved hypothetical protein; GC: 40.92%; Transmembrane domains: 7. Codon Adaptation Index (CAI): 0.785. Curator(s): M. Serrano, J. Alves.
       0.624
SSA_0154
Conserved hypothetical protein; GC: 38.94%; Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.811. Curator(s): M. Serrano, J. Alves.
       0.538
SSA_0160
Conserved hypothetical protein; GC: 40.57%; Codon Adaptation Index (CAI): 0.785. Curator(s): M. Serrano, J. Alves.
       0.450
SSA_0161
Conserved hypothetical protein; GC: 43.5%; Codon Adaptation Index (CAI): 0.788. Curator(s): M. Serrano, J. Alves.
       0.450
SSA_0164
Conserved hypothetical protein; GC: 45.49%; Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.777. SignalP prediction: Yes (prob. 0.993); Curator(s): M. Serrano, J. Alves; possible function in cell wall glycoprotein metabolism.
       0.450
SSA_0165
Conserved hypothetical protein; GC: 41.58%; Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.725. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.999); Curator(s): M. Serrano, J. Alves.
       0.450
SSA_0157
Hypothetical protein; GC: 44.56%; Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.807. LipoP prediction: SpI. Curator(s): M. Serrano.
       0.415
SSA_0158
Conserved hypothetical protein; GC: 42.04%; Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.795. Curator(s): M. Serrano, J. Alves.
       0.415
Your Current Organism:
Streptococcus sanguinis SK36
NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36
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