STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SSA_0171Cro-like transcriptional repressor, XRE family, putative; GC: 37.5%; Codon Adaptation Index (CAI): 0.711. Helix-turn-helix prediction: AraC. Curator(s): M. Serrano, J. Alves; Protein involved in regulation of transcription. (63 aa)    
Predicted Functional Partners:
SSA_0170
Uncharacterized protein; GC: 37.65%; Codon Adaptation Index (CAI): 0.777. Curator(s): M. Serrano, J. Alves.
       0.603
SSA_0172
Transcriptional regulator, XRE family, putative; GC: 41.5%; Codon Adaptation Index (CAI): 0.745. Curator(s): M. Serrano, J. Alves; Protein involved in DNA binding, serine-type peptidase activity and regulation of transcription, DNA-dependent.
       0.473
Your Current Organism:
Streptococcus sanguinis SK36
NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.