STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SSA_0182Endoglucanase, putative; GC: 42.37%; Codon Adaptation Index (CAI): 0.795. Curator(s): M. Serrano; Protein involved in hydrolase activity, acting on glycosyl bonds and carbohydrate metabolism; Belongs to the glycosyl hydrolase 8 (cellulase D) family. (342 aa)    
Predicted Functional Partners:
SSA_0181
Glycosyltransferase (vectorial glycosyl polymerization (VGP) family), putative; GC: 43.94%; Transporter classification TC:9.B.32.1.3. Transmembrane domains: 4. Codon Adaptation Index (CAI): 0.79. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.585); Helix-turn-helix prediction: AraC. Curator(s): M. Serrano.
 
  
 0.949
SSA_0179
Conserved hypothetical protein; GC: 40.18%; Transmembrane domains: 3. Codon Adaptation Index (CAI): 0.761. Curator(s): M. Serrano, J. Alves; possibly membrane-associated.
 
     0.897
epsC
UDP-N-acetylglucosamine 2-epimerase, putative; GC: 44.73%; Codon Adaptation Index (CAI): 0.809. Curator(s): M. Serrano; Protein involved in isomerase activity and lipopolysaccharide biosynthesis; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
  
    0.700
SSA_0565
Conserved hypothetical protein; GC: 45.36%; Codon Adaptation Index (CAI): 0.801. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1); Weakly similar to surface exclusion protein prgA. Curator(s): D. Akan, J. Alves.
  
    0.604
SSA_1876
Conserved hypothetical protein; GC: 41.62%; Transmembrane domains: 4. Codon Adaptation Index (CAI): 0.746.
  
     0.584
SSA_1981
Conserved hypothetical protein; GC: 41.63%; Transmembrane domains: 4. Codon Adaptation Index (CAI): 0.783. SignalP prediction: Yes (prob. 0.702).
  
     0.434
gtfP
Glucosyltransferase, putative; GC: 44.13%; Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.796. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.998); Curator(s): P. Xu; Protein involved in transferase activity and dextransucrase activity.
  
  
 0.420
SSA_0183
Conserved hypothetical protein; GC: 45.41%; Codon Adaptation Index (CAI): 0.814. Curator(s): M. Serrano.
       0.401
Your Current Organism:
Streptococcus sanguinis SK36
NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36
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