Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
comYBCompetence protein ComYB, putative; GC: 44.18%; Transporter classification TC:3.A.14.1.1. Transmembrane domains: 3. Codon Adaptation Index (CAI): 0.788. Curator(s): M. Serrano, J. Alves. (334 aa)    
Predicted Functional Partners:
comYA
Competence protein ComYA, putative; GC: 47.24%; Transporter classification TC:3.A.14.1.1. Codon Adaptation Index (CAI): 0.79. Curator(s): M. Serrano, J. Alves; Protein involved in nucleoside-triphosphatase activity and transport.
 
 
 0.999
comYC
Competence protein ComYC, putative; GC: 42.45%; Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.818. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.982); Curator(s): M. Serrano, J. Alves; Protein involved in type II protein secretion system.
 
  
 0.994
SSA_2318
PilB-like pili biogenesis ATPase, putative; GC: 45.45%; Transporter classification TC:3.A.15.2.1. Codon Adaptation Index (CAI): 0.755; Protein involved in nucleoside-triphosphatase activity.
 
 
 0.958
SSA_0189
Competence protein ComGF, putative; GC: 46.39%; Codon Adaptation Index (CAI): 0.776. Curator(s): M. Serrano, J. Alves.
  
  
 0.947
comYD
Competence protein ComYD, putative; GC: 45.86%; Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.741. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.999); Curator(s): M. Serrano, J. Alves.
  
  
 0.922
SSA_0188
Conserved hypothetical protein; GC: 48.72%; Codon Adaptation Index (CAI): 0.797. Curator(s): M. Serrano, J. Alves.
  
  
 0.904
SSA_0183
Conserved hypothetical protein; GC: 45.41%; Codon Adaptation Index (CAI): 0.814. Curator(s): M. Serrano.
 
   
 0.895
SSA_2302
Type IV fimbrial biogenesis protein, prepilin cysteine protease (C20) PilD, putative; GC: 45.88%; Transporter classification TC:3.A.15.2.1. Transmembrane domains: 7. Codon Adaptation Index (CAI): 0.753; Protein involved in hydrolase activity.
 
  
 0.855
pilD
Type 4 prepilin peptidase, putative; GC: 44.19%; Transmembrane domains: 5. Codon Adaptation Index (CAI): 0.709. Curator(s): P. Xu, J. Alves.
 
  
 0.827
SSA_2313
Hypothetical protein; GC: 45.95%; Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.797. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.999).
 
  
 0.812
Your Current Organism:
Streptococcus sanguinis SK36
NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36
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