Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SSA_0218Sugar-binding periplasmic protein, putative; GC: 46.65%; Transporter classification TC:3.A.1.1.16. Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.787. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1); Curator(s): P. Manque; Protein involved in transport. (427 aa)    
Predicted Functional Partners:
rbsB
Periplasmic sugar-binding protein (ribose porter), putative; GC: 45.49%; Transporter classification TC:3.A.1.2.1. Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.762. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.516); Curator(s): P. Manque, J. Alves.
 
  
 0.976
SSA_0216
Histidine kinase, putative; GC: 44.98%; Transmembrane domains: 5. Codon Adaptation Index (CAI): 0.745. Curator(s): P. Manque; Protein involved in protein dimerization activity.
 
    0.967
SSA_0217
Two-component response transcriptional regulator; GC: 46.93%; Codon Adaptation Index (CAI): 0.765. Curator(s): P. Manque, J. Alves; Protein involved in sensory perception and regulation of transcription, DNA-dependent.
 
    0.963
SSA_0219
PTS system, sugar-specific enzyme IIA component, putative; GC: 49.54%; Transporter classification TC:4.A.6.1.4. Codon Adaptation Index (CAI): 0.79. Curator(s): P. Manque; Protein involved in transferase activity.
 
    0.904
SSA_0220
PTS system, mannose-specific IIB component, putative; GC: 45.45%; Transporter classification TC:4.A.6.1.2. Codon Adaptation Index (CAI): 0.79. Curator(s): P. Manque; Protein involved in transferase activity and phosphoenolpyruvate-dependent sugar phosphotransferase system.
 
     0.901
SSA_0221
PTS system, mannose-specific IIC component, putative; GC: 44.92%; Transporter classification TC:4.A.6.1.1. Transmembrane domains: 7. Codon Adaptation Index (CAI): 0.793. SignalP prediction: Yes (prob. 0.878); Curator(s): P. Manque; Protein involved in transferase activity.
 
     0.897
SSA_0222
PTS system, mannose-specific IID component, putative; GC: 45.64%; Transporter classification TC:4.A.6.1.2. Transmembrane domains: 5. Codon Adaptation Index (CAI): 0.779. Curator(s): P. Manque; Protein involved in transferase activity.
 
     0.878
SSA_0224
Conserved hypothetical protein; GC: 39.86%; Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.736. Curator(s): P. Manque.
 
    0.841
msmG
Sugar ABC transporter, permease protein, putative; GC: 37.65%; Transporter classification TC:3.A.1.1.2. Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.788. SignalP prediction: Yes (prob. 0.929).
 
 
 0.793
SSA_0076
ABC sugar transporter, permease protein, putative; GC: 36.81%; Transporter classification TC:3.A.1.1.17. Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.735. Curator(s): J. Alves.
 
 
 0.786
Your Current Organism:
Streptococcus sanguinis SK36
NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36
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