Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SSA_0221PTS system, mannose-specific IIC component, putative; GC: 44.92%; Transporter classification TC:4.A.6.1.1. Transmembrane domains: 7. Codon Adaptation Index (CAI): 0.793. SignalP prediction: Yes (prob. 0.878); Curator(s): P. Manque; Protein involved in transferase activity. (281 aa)    
Predicted Functional Partners:
SSA_0222
PTS system, mannose-specific IID component, putative; GC: 45.64%; Transporter classification TC:4.A.6.1.2. Transmembrane domains: 5. Codon Adaptation Index (CAI): 0.779. Curator(s): P. Manque; Protein involved in transferase activity.
 
 0.999
SSA_0220
PTS system, mannose-specific IIB component, putative; GC: 45.45%; Transporter classification TC:4.A.6.1.2. Codon Adaptation Index (CAI): 0.79. Curator(s): P. Manque; Protein involved in transferase activity and phosphoenolpyruvate-dependent sugar phosphotransferase system.
 
 
 0.993
SSA_1918
Phosphotransferase system, mannose-specific EIIAB, putative; GC: 45.97%; Transporter classification TC:4.A.6.1.1. Codon Adaptation Index (CAI): 0.799; Protein involved in transferase activity.
 
 0.993
SSA_0056
Phosphotransferase system sugar-specific EIID component, putative; GC: 42.18%; Transporter classification TC:4.A.6.1.1. Transmembrane domains: 5. Codon Adaptation Index (CAI): 0.793. Curator(s): J. Alves; Protein involved in transferase activity.
 
 0.984
SSA_0219
PTS system, sugar-specific enzyme IIA component, putative; GC: 49.54%; Transporter classification TC:4.A.6.1.4. Codon Adaptation Index (CAI): 0.79. Curator(s): P. Manque; Protein involved in transferase activity.
 
 
 0.982
SSA_1920
Phosphotransferase system, mannose-specific EIID, putative; GC: 42.36%; Transporter classification TC:4.A.6.1.1. Transmembrane domains: 4. Codon Adaptation Index (CAI): 0.798; Protein involved in transferase activity.
 
 0.980
SSA_0057
Phosphotransferase system sugar-specific EII component, putative; GC: 42.72%; Transporter classification TC:4.A.6.1.2. Codon Adaptation Index (CAI): 0.789. Curator(s): J. Alves; Protein involved in transferase activity.
 
 0.941
SSA_0224
Conserved hypothetical protein; GC: 39.86%; Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.736. Curator(s): P. Manque.
 
     0.935
SSA_1919
Phosphotransferase system, mannose-specific EIIC, putative; GC: 47.58%; Transporter classification TC:4.A.6.1.1. Transmembrane domains: 7. Codon Adaptation Index (CAI): 0.799. SignalP prediction: Yes (prob. 0.707); Protein involved in transferase activity.
  
  
  0.912
SSA_0055
PTS system, IIC component, putative; GC: 45.14%; Transporter classification TC:4.A.6.1.2. Transmembrane domains: 7. Codon Adaptation Index (CAI): 0.767. Curator(s): J. Alves.
  
  
 
0.908
Your Current Organism:
Streptococcus sanguinis SK36
NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36
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