STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SSA_0244Conserved hypothetical protein; GC: 35.62%; Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.756. SignalP prediction: Yes (prob. 0.67); Curator(s): P. Manque, J. Alves. (130 aa)    
Predicted Functional Partners:
rpmB
50S ribosomal protein L28, putative; GC: 39.68%; Codon Adaptation Index (CAI): 0.837; Belongs to the bacterial ribosomal protein bL28 family.
  
 
 0.822
rplM
50S ribosomal protein L13, putative; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
  
 
 0.822
rpsU
Ribosomal protein S21, putative; GC: 37.85%; Codon Adaptation Index (CAI): 0.833. Curator(s): L. Ozaki; Belongs to the bacterial ribosomal protein bS21 family.
  
 
 0.820
rpmE
50S ribosomal protein L31 type B, putative; GC: 41.56%; Codon Adaptation Index (CAI): 0.781.
  
 
 0.820
rpsO
30S ribosomal protein S15, putative; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.
  
 
 0.820
rplU
50S ribosomal protein L21, putative; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
   
 
 0.819
rpsP
30S ribosomal protein S16, putative; GC: 39.93%; Codon Adaptation Index (CAI): 0.801; Protein involved in protein biosynthesis; Belongs to the bacterial ribosomal protein bS16 family.
  
 
 0.819
rpsI
30S ribosomal protein S9, putative; GC: 45.8%; Codon Adaptation Index (CAI): 0.784; Belongs to the universal ribosomal protein uS9 family.
  
 
 0.819
rpmF
50S ribosomal protein L32, putative; GC: 48.09%; Codon Adaptation Index (CAI): 0.761; Belongs to the bacterial ribosomal protein bL32 family.
   
 
 0.819
rpmA
50S ribosomal protein L27, putative; GC: 45.92%; Codon Adaptation Index (CAI): 0.795; Protein involved in protein biosynthesis; Belongs to the bacterial ribosomal protein bL27 family.
  
 
 0.813
Your Current Organism:
Streptococcus sanguinis SK36
NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.