STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SSA_0310Conserved hypothetical protein; GC: 40.14%; Codon Adaptation Index (CAI): 0.782. Helix-turn-helix prediction: AraC. Curator(s): T. Kitten; Protein involved in regulation of transcription and regulation of transcription, DNA-dependent. (195 aa)    
Predicted Functional Partners:
SSA_0309
Glyoxalase/Bleomycin resistance protein/dioxygenase domain, putative; GC: 39.76%; Codon Adaptation Index (CAI): 0.787. Curator(s): T. Kitten; Protein involved in oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen.
 
    0.945
SSA_0311
Conserved hypothetical protein; GC: 41.63%; Codon Adaptation Index (CAI): 0.798. Curator(s): T. Kitten; Protein involved in binding.
 
     0.847
SSA_0441
Conserved hypothetical protein; GC: 40.16%; Codon Adaptation Index (CAI): 0.793. Helix-turn-helix prediction: AraC. Curator(s): M. Chaplin; Protein involved in regulation of transcription.
  
     0.662
SSA_0349
Transcriptional regulator, TetR/AcrR family, putative; GC: 49.14%; Codon Adaptation Index (CAI): 0.786. Helix-turn-helix prediction: AraC. Curator(s): T. Kitten; Protein involved in regulation of transcription and regulation of transcription, DNA-dependent.
  
     0.589
SSA_0609
Transcriptional regulator, TetR/AcrR family, putative; GC: 43.2%; Codon Adaptation Index (CAI): 0.759. Curator(s): D. Akan, J. Alves; Protein involved in regulation of transcription.
  
     0.565
SSA_0308
Conserved hypothetical protein; GC: 39.76%; Codon Adaptation Index (CAI): 0.787. Curator(s): T. Kitten; Protein involved in N-acetyltransferase activity and transferase activity.
       0.539
glnA
Glutamine synthetase type 1, putative; GC: 45.06%; Codon Adaptation Index (CAI): 0.803. Curator(s): T. Kitten; Protein involved in ligase activity; Belongs to the glutamine synthetase family.
     
 0.442
Your Current Organism:
Streptococcus sanguinis SK36
NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.