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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cppAC3-degrading proteinase, putative; GC: 42.45%; Codon Adaptation Index (CAI): 0.784. Curator(s): T. Kitten. (244 aa)    
Predicted Functional Partners:
SSA_0332
Conserved hypothetical protein; GC: 47.22%; Codon Adaptation Index (CAI): 0.783. Curator(s): T. Kitten; Protein involved in response to antibiotic.
       0.800
SSA_0330
Membrane protein, putative; GC: 42.45%; Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.795. Curator(s): T. Kitten.
       0.539
fni
Isopentenyl-diphosphate delta-isomerase, putative; Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP).
  
    0.536
mvaK1
Mevalonate kinase, putative; GC: 49.37%; Codon Adaptation Index (CAI): 0.763. Curator(s): T. Kitten; Protein involved in carbohydrate phosphorylation.
       0.533
mvaD
Diphosphomevalonate decarboxylase, putative; GC: 47.78%; Codon Adaptation Index (CAI): 0.788. Curator(s): T. Kitten; Protein involved in lyase activity and phosphorylation.
       0.533
mvaK2
Phosphomevalonate kinase, putative; GC: 47.55%; Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.767. Curator(s): T. Kitten; Protein involved in phosphorylation.
       0.533
SSA_0329
Glycerol uptake facilitator/aquaporin protein, putative; GC: 45.81%; Transporter classification TC:1.A.8.2.2. Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.795. Curator(s): T. Kitten; Belongs to the MIP/aquaporin (TC 1.A.8) family.
       0.478
Your Current Organism:
Streptococcus sanguinis SK36
NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36
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